Database Mining of the Human Genome

Molecular databases include four representative implementations:

1. European Molecular Biology Laboratory Nucleotide Sequence Data Library (EMBL). http://www.embl-heidelberg.de/
2. DNA Database of Japan (DDBJ). http://www.ddbj.nig.ac.jp/
3. Genbank. http://www.ncbi.nlm.nih.gov/Genbank/GenbankSearch.html
4. Swiss-Prot. http://www.expasy.ch/sprot/sprot-top.html

Genetic databases include two representative implementations:

1. Genome Database (GDB). http://www.gdb.org/
2. Online Mendelian Inheritance in Man (OMIM). http://www3.ncbi.nlm.nih.gov/Omim/

DNA analysis: computational algorithms:

1. Aat. http://genome.cs.mtu.edu/aat.html
2. Banbury Cross. http://igs-server.cnrs-mrs.fr/igs/banbury/
3. GeneParser. http://beagle.colorado.edu/
4. Genie. http://www.fruitfly.org/seq_tools/genie.html
5. Genscan. http://genes.mit.edu/GENSCAN.html
6. GenViewer. http://www.itba.mi.cnr.it/webgene/
7. Grail. http://compbio.ornl.gov/Grail-1.3/
8. Mzef. http://www.cshl.org/genefinder/
9. ORFgene. http://www.itba.mi.cnr.it/webgene/
10. Sorfind. http://www.rabbithutch.com
11. Xgrail. http://www.hgmp.embnet.org/

Human gene expression databases include eight representative implementations:

1. dbEST. http://www.ncbi.nlm.nih.gov/dbEST/index.html
2. GeneCards. http://bioinformatics.weizmann.ac.il/cards/
3. Globin Gene Server. http://globin.cse.psu.edu
4. Human Developmental Anatomy. http://www.ana.ed.ac.uk/anatomy/database/humat/
5. Kidney Development Database. http://golgi.ana.ed.ac.uk/kidhome.html
6. Tooth Gene Expression Database. http://bite-it.helsinki.fi/

Human proteome databases include eleven representative implementations:

1. FindMod Tool. http://www.expasy.ch/tools/findmod
2. Heart High-Performance 2-D Database. http://www.mdc-berlin.de/~emu/heart/
3. HEART-2-D PAGE. http://userpage.chemie.fu-berlin.de/~pleiss/dhzb.html
4. Human 2-D Page Databases. http://proteomics.cancer.dk/
5. NCI 2DWG Image Meta-Database. http://www-lecb.ncifcrf.gov/2dwgDB/
6. SWISS-2-D PAGE. http://www.expasy.ch/ch2d/
7. WORLD-2-D PAGE. http://www.expasy.ch/ch2d/2d-index.html